Skip to content
Toggle navigation
P
Projects
G
Groups
S
Snippets
Help
Jigyasa Watwani
/
growth-pattern-control
This project
Loading...
Sign in
Toggle navigation
Go to a project
Project
Repository
Issues
0
Merge Requests
0
Pipelines
Wiki
Snippets
Members
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Commit
a9ae2bdb
authored
Aug 24, 2022
by
Jigyasa Watwani
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
works for some h, region of stability?
parent
a4c670d9
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
51 additions
and
107 deletions
euler_error/euler_error_moving_domain_diffusion_advection.py
moving_domain/moving_domain_heat_equation_2.py
euler_error/euler_error_moving_domain_diffusion_advection.py
0 → 100644
View file @
a9ae2bdb
# moving domain diffusion advection equation
# boundary condition: diffusive flux at the boundaries [0,1] is zero
# initial condition c(x,0) = 1 + 0.2*cos(pi x) ; satisfies the boundary condition
# exact solution at steady state: c(x) = c(0) e^(vx/D)
import
numpy
as
np
import
dolfin
as
df
import
matplotlib.pyplot
as
plt
import
progressbar
from
scipy.optimize
import
curve_fit
df
.
set_log_level
(
df
.
LogLevel
.
ERROR
)
df
.
parameters
[
'form_compiler'
][
'optimize'
]
=
True
def
advection_diffusion
(
Nx
,
L
,
Nt
,
tmax
,
v
,
D
):
mesh
=
df
.
IntervalMesh
(
Nx
,
0
,
L
)
function_space
=
df
.
FunctionSpace
(
mesh
,
'P'
,
1
)
c
,
tc
=
df
.
Function
(
function_space
),
df
.
TestFunction
(
function_space
)
times
=
np
.
linspace
(
0
,
tmax
,
Nt
+
1
)
dt
=
times
[
1
]
-
times
[
0
]
c0
=
df
.
interpolate
(
df
.
Expression
(
'1 + 0.2*cos(pi*x[0]/L)'
,
pi
=
np
.
pi
,
L
=
L
,
degree
=
1
),
function_space
)
# form
u
=
df
.
interpolate
(
v
,
function_space
)
form
=
(
df
.
inner
((
c
-
c0
)
/
dt
,
tc
)
+
df
.
inner
((
u
*
c
)
.
dx
(
0
),
tc
)
+
D
*
df
.
inner
(
tc
.
dx
(
0
),
c
.
dx
(
0
)))
*
df
.
dx
(
mesh
)
for
_
in
progressbar
.
progressbar
(
range
(
1
,
len
(
times
)
+
1
)):
df
.
solve
(
form
==
0
,
c
)
df
.
ALE
.
move
(
mesh
,
df
.
Expression
(
'v*dt'
,
v
=
v
,
dt
=
dt
,
degree
=
1
))
x
=
mesh
.
coordinates
()
c0
.
assign
(
c
)
return
[
c
.
compute_vertex_values
(
mesh
),
x
]
Nx
,
L
,
tmax
,
D
,
k
=
2000
,
1
,
5
,
1
,
1
v
=
df
.
Expression
(
'k*x[0]'
,
k
=
k
,
degree
=
1
)
nt_array
=
np
.
array
([
50
,
100
,
200
,
400
,
800
,
1600
,
3200
,
6400
,
12800
])
dt_array
=
tmax
/
(
nt_array
-
1
)
error_in_c
=
np
.
zeros
(
len
(
nt_array
))
for
i
in
range
(
len
(
nt_array
)):
x
=
advection_diffusion
(
Nx
,
L
,
nt_array
[
i
],
tmax
,
v
,
D
)[
-
1
]
ss_c_exact
=
2
*
np
.
exp
(
-
k
*
tmax
)
*
(
1
+
0.2
*
np
.
cos
(
np
.
pi
*
x
*
np
.
exp
(
-
k
*
tmax
))
*
np
.
exp
(
-
np
.
pi
**
2
*
(
D
/
(
2
*
k
))
*
(
1
-
np
.
exp
(
-
2
*
k
*
tmax
))))
ss_c
=
advection_diffusion
(
Nx
,
L
,
nt_array
[
i
],
tmax
,
v
,
D
)[
0
]
error_in_c
[
i
]
=
np
.
max
(
np
.
abs
(
ss_c
-
ss_c_exact
))
plt
.
scatter
(
dt_array
,
error_in_c
)
plt
.
show
()
moving_domain/moving_domain_heat_equation_2.py
deleted
100644 → 0
View file @
a4c670d9
import
dolfin
as
df
import
numpy
as
np
import
matplotlib.pyplot
as
plt
from
matplotlib.widgets
import
Slider
import
progressbar
# bother me only if there is an error
df
.
set_log_level
(
df
.
LogLevel
.
ERROR
)
df
.
parameters
[
'form_compiler'
][
'optimize'
]
=
True
# parameters
Nx
=
2000
L
=
2
*
np
.
pi
dt
=
0.005
T
=
5
D
=
1.0
k
=
0.5
times
=
np
.
arange
(
0
,
T
,
dt
)
# diffusion and advection
def
diffusion
(
func
,
testfunc
,
D
):
return
D
*
df
.
inner
(
func
.
dx
(
0
),
testfunc
.
dx
(
0
))
def
advection
(
func
,
testfunc
,
vel
):
return
df
.
inner
((
vel
*
func
)
.
dx
(
0
),
testfunc
)
# mesh
mesh
=
df
.
IntervalMesh
(
Nx
,
0
,
L
)
x
=
mesh
.
coordinates
()
# function space
conc_element
=
df
.
FiniteElement
(
'P'
,
mesh
.
ufl_cell
(),
1
)
function_space
=
df
.
FunctionSpace
(
mesh
,
conc_element
)
# define velocity
v
=
df
.
Constant
(
0.5
)
# v = df.interpolate(df.Expression('1.0', degree=1), function_space)
# initial condition
c0
=
df
.
interpolate
(
df
.
Expression
(
'1 + 0.2*cos(x[0])'
,
degree
=
1
),
function_space
)
# define function, test function
c
=
df
.
Function
(
function_space
)
tc
=
df
.
TestFunction
(
function_space
)
# weak form
form
=
(
df
.
inner
((
c
-
c0
)
/
dt
,
tc
)
+
diffusion
(
c
,
tc
,
D
)
+
advection
(
c
,
tc
,
v
)
)
*
df
.
dx
# define the arrays
c_array
=
np
.
zeros
((
len
(
times
),
len
(
x
)))
c_array
[
0
]
=
c0
.
compute_vertex_values
(
mesh
)
x_array
=
np
.
zeros
((
len
(
times
),
mesh
.
num_vertices
()))
x_array
[
0
]
=
mesh
.
coordinates
()[:,
0
]
c_tot
=
np
.
zeros_like
(
times
)
c_tot
[
0
]
=
df
.
assemble
(
c0
*
df
.
dx
(
mesh
))
# time stepping
for
i
in
progressbar
.
progressbar
(
range
(
1
,
len
(
times
))):
df
.
solve
(
form
==
0
,
c
)
c_tot
[
i
]
=
df
.
assemble
(
c
*
df
.
dx
(
mesh
))
c_array
[
i
]
=
c
.
compute_vertex_values
(
mesh
)
df
.
ALE
.
move
(
mesh
,
df
.
Expression
(
'v*dt'
,
v
=
v
,
dt
=
dt
,
degree
=
1
))
x_array
[
i
]
=
mesh
.
coordinates
()[:,
0
]
c0
.
assign
(
c
)
# plotting
# plot c(x,t) vs x for all t
fig
,
axc
=
plt
.
subplots
(
1
,
1
,
figsize
=
(
8
,
6
))
axc
.
set_xlabel
(
r'$x$'
)
axc
.
set_ylabel
(
r'$c(x,t)$'
)
cplot
,
=
axc
.
plot
(
x_array
[
0
],
c_array
[
0
],
'r'
)
axc
.
set_xlim
(
np
.
min
(
x_array
)
-
2
,
np
.
max
(
x_array
)
+
2
)
axc
.
set_ylim
(
np
.
min
(
c_array
)
-
2
,
np
.
max
(
c_array
)
+
2
)
def
update
(
value
):
ti
=
np
.
abs
(
times
-
value
)
.
argmin
()
cplot
.
set_xdata
(
x_array
[
ti
])
cplot
.
set_ydata
(
c_array
[
ti
])
plt
.
draw
()
sax
=
plt
.
axes
([
0.1
,
0.92
,
0.7
,
0.02
])
slider
=
Slider
(
sax
,
r'$t/\tau$'
,
min
(
times
),
max
(
times
),
valinit
=
min
(
times
),
valfmt
=
'
%3.1
f'
,
fc
=
'#999999'
)
slider
.
drawon
=
False
slider
.
on_changed
(
update
)
# plot ctot vs time
fig1
,
ax1
=
plt
.
subplots
(
1
,
figsize
=
(
8
,
6
))
fig1
.
subplots_adjust
(
left
=
0.1
,
bottom
=
0.1
,
top
=
0.9
,
right
=
0.9
,
wspace
=
0.0
,
hspace
=
0.0
)
ax1
.
plot
(
times
,
c_tot
)
ax1
.
set_ylim
([
0
,
np
.
max
(
c_tot
)
+
1
])
ax1
.
set_xlabel
(
r'$t$'
)
ax1
.
set_title
(
'Total concentration vs time'
)
ax1
.
set_ylabel
(
r'$\int_{\Gamma} c$'
,
color
=
'#ff5b00'
)
plt
.
show
()
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment