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growth-pattern-control
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Commit
1a71fc46
authored
Sep 09, 2022
by
Jigyasa Watwani
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Plain Diff
max error scaling linearly with dt
parent
f83b6210
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1 changed file
with
46 additions
and
47 deletions
diffusion/diffusion_moving_domain.py
diffusion/diffusion_moving_domain.py
View file @
1a71fc46
...
...
@@ -7,61 +7,61 @@ import progressbar
df
.
set_log_level
(
df
.
LogLevel
.
ERROR
)
df
.
parameters
[
'form_compiler'
][
'optimize'
]
=
True
Nx
,
L
,
D
,
tmax
,
dt
=
32
,
1.0
,
0.1
,
2.0
,
0.05
Nt
=
int
(
tmax
/
dt
)
def
advection_diffusion
(
Nx
,
L
,
Nt
,
tmax
,
D
):
# mesh, function space, function, test function
mesh
=
df
.
IntervalMesh
(
Nx
,
0
,
L
)
SFS
=
df
.
FunctionSpace
(
mesh
,
'P'
,
1
)
c
=
df
.
Function
(
SFS
)
tc
=
df
.
TestFunction
(
SFS
)
mesh
=
df
.
IntervalMesh
(
Nx
,
0
,
L
)
x
=
mesh
.
coordinates
()[:,
0
]
times
=
np
.
linspace
(
0
,
tmax
,
Nt
+
1
)
# x and t arrays
x
=
mesh
.
coordinates
()[:,
0
]
times
=
np
.
linspace
(
0
,
tmax
,
Nt
+
1
)
dt
=
times
[
1
]
-
times
[
0
]
SFS
=
df
.
FunctionSpace
(
mesh
,
'P'
,
1
)
c
=
df
.
Function
(
SFS
)
tc
=
df
.
TestFunction
(
SFS
)
c0
=
df
.
Function
(
SFS
)
# initial condition
c0
=
df
.
Function
(
SFS
)
c0
.
interpolate
(
df
.
Expression
(
'1 + 0.1 * cos(2*pi*x[0]/L)'
,
pi
=
np
.
pi
,
L
=
L
,
degree
=
1
))
c0
.
interpolate
(
df
.
Expression
(
'1 + 0.1 * cos(2*pi*x[0]/L)'
,
pi
=
np
.
pi
,
L
=
L
,
degree
=
1
))
# arrays
c_array
=
np
.
zeros
((
Nt
+
1
,
Nx
+
1
))
c_array
[
0
]
=
c0
.
compute_vertex_values
(
mesh
)
c_exact
=
np
.
zeros
((
Nt
+
1
,
Nx
+
1
))
for
i
in
range
(
Nt
+
1
):
c_exact
[
i
]
=
1
+
0.1
*
np
.
cos
(
2
*
np
.
pi
*
x
/
L
)
*
np
.
exp
(
-
4
*
np
.
pi
**
2
*
D
*
times
[
i
]
/
L
**
2
)
# form
cform
=
(
df
.
inner
((
c
-
c0
)
/
dt
,
tc
)
+
D
*
df
.
inner
(
df
.
nabla_grad
(
c
),
df
.
nabla_grad
(
tc
)))
*
df
.
dx
c_array
=
np
.
zeros
((
Nt
+
1
,
Nx
+
1
))
c_array
[
0
]
=
c0
.
compute_vertex_values
(
mesh
)
# solve
for
i
in
progressbar
.
progressbar
(
range
(
1
,
Nt
+
1
)):
df
.
solve
(
cform
==
0
,
c
)
c0
.
assign
(
c
)
c_array
[
i
]
=
c0
.
compute_vertex_values
(
mesh
)
cform
=
(
df
.
inner
((
c
-
c0
)
/
dt
,
tc
)
+
D
*
df
.
inner
(
df
.
nabla_grad
(
c
),
df
.
nabla_grad
(
tc
)))
*
df
.
dx
return
c_array
for
i
in
progressbar
.
progressbar
(
range
(
1
,
Nt
+
1
)):
df
.
solve
(
cform
==
0
,
c
)
c0
.
assign
(
c
)
c_array
[
i
]
=
c0
.
compute_vertex_values
(
mesh
)
# parameters
Nx
,
L
,
D
,
tmax
=
64
,
1.0
,
0.1
,
1.0
nt_array
=
np
.
array
([
50
,
100
,
200
,
400
,
600
,
800
,
1600
])
dt_array
=
tmax
/
nt_array
mesh
=
df
.
IntervalMesh
(
Nx
,
0
,
L
)
x
=
mesh
.
coordinates
()[:,
0
]
fig
,
(
ax
,
ax1
)
=
plt
.
subplots
(
2
,
1
)
fig
.
suptitle
(
r'$N_x =
%
d, \Delta t =
%4.3
f$'
%
(
Nx
,
dt
))
cplot
,
=
ax
.
plot
(
x
,
c_array
[
0
],
'ro'
,
mfc
=
'none'
,
ms
=
6
,
label
=
'Numerics'
)
ceplot
,
=
ax
.
plot
(
x
,
c_exact
[
0
],
label
=
'Exact'
)
ax
.
set_xlabel
(
r'$x$'
)
ax
.
set_ylabel
(
r'$c(x,t)$'
)
ax
.
legend
(
loc
=
1
)
# error array
error
=
np
.
zeros
(
len
(
nt_array
))
error
=
c_array
-
c_exact
print
(
np
.
max
(
error
))
for
i
in
range
(
0
,
len
(
nt_array
)):
err_plot
,
=
ax1
.
plot
(
x
,
error
[
0
],
'bo'
,
mfc
=
'none'
,
ms
=
6
)
ax1
.
set_ylim
(
np
.
min
(
error
),
np
.
max
(
error
))
ax1
.
set_xlabel
(
r'$x$'
)
ax1
.
set_ylabel
(
r'$c(x,t)-c_{\rm exact}(x,t)$'
)
# exact solution
c_exact
=
np
.
zeros
((
nt_array
[
i
]
+
1
,
Nx
+
1
))
times
=
np
.
linspace
(
0
,
tmax
,
nt_array
[
i
]
+
1
)
for
j
in
range
(
nt_array
[
i
]
+
1
):
c_exact
[
j
]
=
1
+
0.1
*
np
.
cos
(
2
*
np
.
pi
*
x
/
L
)
*
np
.
exp
(
-
4
*
np
.
pi
**
2
*
D
*
times
[
j
]
/
L
**
2
)
c
=
advection_diffusion
(
Nx
,
L
,
nt_array
[
i
],
tmax
,
D
)
error
[
i
]
=
np
.
max
(
np
.
abs
(
c
-
c_exact
))
def
update
(
val
):
ti
=
(
abs
(
times
-
val
))
.
argmin
()
cplot
.
set_ydata
(
c_array
[
ti
])
ceplot
.
set_ydata
(
c_exact
[
ti
])
err_plot
.
set_ydata
(
error
[
ti
])
plt
.
draw
()
sax
=
plt
.
axes
([
0.1
,
0.92
,
0.7
,
0.025
])
sl
=
Slider
(
sax
,
't'
,
times
.
min
(),
times
.
max
(),
valinit
=
times
.
min
())
sl
.
on_changed
(
update
)
fig
,
ax
=
plt
.
subplots
(
1
)
ax
.
plot
(
dt_array
,
error
,
'bo'
)
ax
.
set_xlabel
(
'$dt$'
)
ax
.
set_ylabel
(
'error'
)
plt
.
show
()
plt
.
show
()
\ No newline at end of file
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